Your Journey into Imaging AI Starts Here
Created by Dr. Sharad Maheshwari, imagingsimplified@gmail.com
This guide provides an interactive overview for radiologists venturing into AI, from curating data to fine-tuning models for clinical use.
The AI Development Workflow
1. Curate Data
Gather & anonymize diverse clinical cases.
2. Annotate
Label images to highlight regions of interest.
3. Train Model
Use tools like Python & Hugging Face.
4. Fine-Tune
Adapt a pre-trained model for a specific task.
5. Evaluate
Test the model on unseen data for accuracy.
1. Building a High-Quality Dataset
The performance of any model is fundamentally dependent on the quality of its training data. This begins with meticulous annotation and thoughtful dataset construction.
Open-Source Annotation Tools
Your clinical expertise is irreplaceable in labeling images. These tools can help.
3D Slicer
Versatile platform for segmentation and 3D visualization (CT, MRI).
ITK-SNAP
Focused on semi-automatic and manual segmentation of 3D images.
Labelbox & V7
Cloud-based, collaborative platforms that support DICOM formats.
Ideal Dataset Split
A dataset is divided to train, validate, and test the model independently. Hover over the chart for details.
2. Choosing Your Tools & Platforms
With a quality dataset, the next step is selecting the right tools to build, train, and fine-tune your model.
Python Libraries for Imaging AI
Python is the leading language for AI. These libraries are essential for development.
The Hugging Face Ecosystem
Hugging Face democratizes AI by providing a central hub of pre-trained models and tools, which is invaluable for healthcare applications.
Hugging Face Hub
Access thousands of state-of-the-art models to use as a foundation, saving immense time and resources.
AutoTrain: The Game-Changer
An automated tool that lets you train models with a user-friendly interface, no complex code required. Perfect for busy clinicians.
Google Colab: Your Cloud Notebook
A free, cloud-based environment that provides GPU access, making it the perfect platform for running your Python code and training models without needing powerful local hardware.
3. Fine-Tuning a Model in Practice
Let's walk through the conceptual steps of fine-tuning a foundation model to generate chest x-ray reports using Google Colab. Click each step for details.
Key Concepts Glossary
Understanding these terms is crucial for effective model training. Click on a card to flip it and see the definition.
References for Further Learning
Explore these resources to deepen your understanding of the concepts discussed in this guide.
- Hugging Face Transformers Documentation - The official guide to the most popular library for building and using foundation models.
- MONAI: Medical Open Network for AI - A PyTorch-based framework specifically designed for AI in medical imaging.
- GitHub Markdown Guide - Learn how to format and structure text when collaborating on open-source projects.
- Hugging Face YouTube Channel - Video tutorials and explanations on using the Hugging Face ecosystem.
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